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Bookmark or Share- Access to ENCODE dataThe ENCODE portal contains these features to access, view, and download ENCODE data: Search metadata : The metadata describing the assays can be searched by entering any string into the text box in the upper right corner of the page or via the faceted browser.
- ENCODESearch the ENCODE Portal. ENCODE. SCREEN. Functional genomics. Functional characterization. Encyclopedia of elements. Rush Alzheimer’s. EN-TEx. Deeply profiled cell lines. Protein knockdown (Degron) Computational and integrative products. Human donors. ENCORE. Stem cell differentiation. Imputed experiments.
- ATAC-seq Data Standards and Processing Pipeline - ENCODEThe ENCODE ATAC-seq pipeline is used for quality control and statistical signal processing of short-read sequencing data, producing alignments and measures of enrichment. Pipeline schematic for replicated data
- Reference Sequences - ENCODEThe ENCODE project uses Reference Genomes from NCBI or UCSC to provide a consistent framework for mapping high-throughput sequencing data. In general, ENCODE data are mapped consistently to 2 human (GRCH38, hg19) and 2 mouse (mm9/mm10) genomes for historical comparability.
- ENCODE Encyclopedia, Version 4: Genomic annotations – ENCODEThe ENCODE Encyclopedia organizes the most salient analysis products into annotations and provides tools to search and visualize them. The Encyclopedia has two levels of annotations: Integrative-level annotations integrate multiple types of experimental data and ground level annotations.
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